Foss: Jmol Application - English

Outline: Important features of Jmol Application. Information regarding download and Installation on various operating systems. Uses of Jmol Application. Clippings of video tutorials available in Jmol Appl..

Foss: Jmol Application - English

Outline: Brief description about Jmol Application. Software requirements. Prerequisites. Open the Jmol Application on Ubuntu/ Linux system. Explain program interface (Menu Bar, Tool bar, Pop-up menu and ..

Foss: Jmol Application - English

Outline: Substitute the hydrogen in molecular model with a functional group. Add and delete bonds Add and delete atoms Pop-up-menu (Contextual menu)

Foss: Jmol Application - English

Outline: Rotate, zoom, move and spin the model Modify the view Change the style of the display. Change the size and color of atoms and bonds. Axes and bound box Save the image in v..

Foss: Jmol Application - English

Outline: Create a model of Carboxylic acid. Example, Acetic acid. Create a model of Nitroalkane. Example, Nitroetane. Label atoms in a model with symbol of the element. Label atoms in a model with number..

Foss: Jmol Application - English

Outline: About Script Commands. How to write Script commands. How to use Script console. Change display of propane by using script commands. Change the color of atoms and bonds. Change the size of bonds a..

Foss: Jmol Application - English

Outline: Create models of alicyclic molecules. Example: Cyclohexane. Create models of aromatic molecules. Example: Benzene. Display Surface topology of molecules. Example: Molecular surface and Dot surface...

Foss: Jmol Application - English

Outline: Load chemical structures from chemical structure database (PubChem). Load structure of Phenol and convert it to Para-amino Phenol. Load structure of cholesterol and highlight the double-bond and sid..

Foss: Jmol Application - English

Outline: * Download CIF (Crystallographic Information File) from Crystallography Open Database (COD). * Open CIF files in Jmol. * Display unit cell and unit cell parameters on Jmol panel. * Display c..

Foss: Jmol Application - English

Outline: Load structures of proteins from Protein Data Bank (PDB). Download .pdb files from the database. View the 3D structure of Insulin using..

Foss: Jmol Application - English

Outline: Load structure of Hexokinase using PDB code. Modify the display of secondary structure. Highlight amino acid residues at the active site. Highlight the substrate. Highlight the cofactors. View Ra..

Foss: Jmol Application - English

Outline: 1. Draw lines (C2 and C3 rotational axes) through atoms in methane molecule. 2. Spin and rotate the molecule along the axis. 3. Draw reflection plane through atoms in methane molecule. 4. Demonstr..

Foss: Jmol Application - English

Outline: Jmol animation using script commands. Demonstration of animation using ethane and hemoglobin as examples. Script commands with keywords, move, delay, slab, loop and capture. Save the a..